Aeon/BIODIVINE

HELP

Network editor actions: Keyboard shortcuts:
(this message disappears when you create the first variable)
close

● Overview

Variables: - Parameter space size: -
Regulations: - State space size: -
Max. in-degree: - Max. out-degree: -
Explicit parameters: (none)

● Variables

Remove variable Show variable

● Regulators

● Update Function

Some name (->) observable activation
close

Compute Engine

● Disconnected

Computation: (none)
Progress: unknown
Discovered classes: -

No engine running? Download binary:

close

Model File

Import

Export

Example Models

close

Bifurcation Function

The computation has been overwritten.
These results are no longer available!
No results loaded. Run analysis to show bifurcation function overview for the currently loaded model.
D disorder | O oscillation | S stability
close

About & Help

Aeon is a tool for analysing long-term behaviour of Boolean networks with parameters. Use the editor to create a new network, or import your own from .sbml or .aeon. You can leave the update functions in the network blank (this will automatically consider all admissible instantiations of such function) or specify an exact update function. In the update function, you can use arbitrary uninterpreted functions as parameters (see Budding Yeast-Irons example). Aeon will then automatically consider all admissible instantiations of such functions when analysing the model.

Once your network is ready, you can run the long-term behaviour analysis which will show you the behaviour classes of the model. The classes are separated based on stable, oscillating or disordered behaviour. For each class, you can generate a witness network that exihibits the specified behaviour.

Manual

Full description of the functionality Aeon provides is available in the tool manual.

Quick Help

Network editor actions: Keyboard shortcuts:

Attributions

Compute Engine: crossbeam, rayon, rocket, json.

Online client: cytoscape with edgehandles, material icons, hotkeys.

Compute Bifurcation
Engine
Import/Export
Model
Auto Layout
Model
Help
v0.2.0